Exporting pyABC’s database to other file formats

pyABC ships with a small convenience utility, which allows to export pyABC’s SQL database to other formats. Supported formats are:

  • CSV

  • feather

  • json

  • msgpack

  • html

  • hdf

  • stata

An example call might look as follows:

abc-export --db results.db --out exported.feather --format feather

This exports the database “results.db” generated by pyABC to “exported.feather” which is written in in the feather format as indicated by the option --format feather (the file extension of the exported file is not parsed).


abc-export --help

for further options to customize the export.