Exporting pyABC’s database to other file formats

pyABC ships with a small convenience utility, which allows to export pyABC’s SQL database to other formats. Supported formats are:

  • CSV
  • feather
  • json
  • msgpack
  • html
  • hdf
  • stata

An example call might look as follows:

abc-export --db results.db --out exported.feather --format feather

This exports the database “results.db” generated by pyABC to “exported.feather” which is written in in the feather format as indicated by the option --format feather (the file extension of the exported file is not parsed).

Check:

abc-export --help

for further options to customize the export.